.. _config_ref tasks ligate steer: ``steer`` ========= Specifies parameters for steered MD to bring C-termini close to their connection points Single-valued attributes: * ``cpu-override``: Override namd3 processor type since GPUresident namd3 cannot handle restraints (yet) (default: True) * ``ensemble``: Name of ensemble to run in; note that NPT can only be performed on a solvated system (default: NVT) * ``force_constant``: force constant (kcal/mol/Angstrom^2) (default: 20) * ``target_distance``: distance (Angstrom) between carbonyl carbon of loop C-terminus and amide nitrogen of connecting residue that steered MD drives to (default: 2) * ``nsteps``: number of MD time steps for steeering (default: 1000) * ``dcdfreq``: number of time steps between configuration output to DCD file (default: 100) * ``xstfreq``: number of time steps between cell size output to DCD file (only used if ensemble is NPT) (default: 100) * ``temperature``: Temperature used in steered MD run (default: 300) * ``pressure``: Pressure used in steered MD run (only used if ensemble is NPT) (default: 1) * ``receiver_flexible_zone_radius``: size of zone around receiver N-terminal N in which CA's are not fixed during steered MD (default: 0.0) Subattribute: .. toctree:: :maxdepth: 1 steer/constraints .. raw:: html