.. _config_ref tasks manipulate mods:

``mods``
========

Specifies modifications to the sequence or structure in the current structure

Single-valued attributes:

  * ``crotations``: dihedral angle rotations to reposition residues

  * ``transrot``: global translations and rotations

  * ``orient``: orient structure along principal axes

  * ``align``: rigidly align the pipeline system to a reference coordinate file

  * ``transfer_coords``: copy atomic coordinates from a donor system onto the pipeline system



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