pestifer.objs.cleavagesite module

CleavageSite is a class for handling chain cleavage in molecular structures. It represents a user-specified modification that cleaves a segment of a chain between two specified residues, creating a new segment.

class pestifer.objs.cleavagesite.CleavageSite(*args, chainID: str, resid1: ResID, resid2: ResID)

Bases: BaseObj

A class for handling chain cleavage. Note that this mod is not expected to be part of an ObjManager so the yaml_header and objcat attributes are irrelevant. It is instead handled as a run task.

chainID: str

model_config = {'arbitrary_types_allowed': True, 'extra': 'forbid', 'frozen': False}

Configuration for pydantic.BaseModel.

model_post_init(context: Any, /) → None

This function is meant to behave like a BaseModel method to initialize private attributes.

It takes context as an argument since that’s what pydantic-core passes when calling it.

Parameters:

• self – The BaseModel instance.

• context – The context.

resid1: ResID

resid2: ResID

shortcode() → str

class pestifer.objs.cleavagesite.CleavageSiteList(initlist: Iterable[T] = ())

Bases: BaseObjList[CleavageSite]

describe()

Abstract method to describe the contents of the BaseObjList. Subclasses should implement this method to provide a meaningful description.