pestifer.subcommands package

Submodules

• pestifer.subcommands.build module
  • RunSubcommand
    • RunSubcommand.add_subparser()
    • RunSubcommand.aliases
    • RunSubcommand.func()
    • RunSubcommand.func_returns_type
    • RunSubcommand.long_help
    • RunSubcommand.name
    • RunSubcommand.short_help
• pestifer.subcommands.build_example module
  • RunExampleSubcommand
    • RunExampleSubcommand.add_subparser()
    • RunExampleSubcommand.aliases
    • RunExampleSubcommand.func()
    • RunExampleSubcommand.func_returns_type
    • RunExampleSubcommand.long_help
    • RunExampleSubcommand.name
    • RunExampleSubcommand.short_help
• pestifer.subcommands.config_default module
  • ConfigDefaultSubcommand
    • ConfigDefaultSubcommand.add_subparser()
    • ConfigDefaultSubcommand.func()
    • ConfigDefaultSubcommand.long_help
    • ConfigDefaultSubcommand.name
    • ConfigDefaultSubcommand.short_help
• pestifer.subcommands.config_help module
  • ConfigHelpSubcommand
    • ConfigHelpSubcommand.add_subparser()
    • ConfigHelpSubcommand.func()
    • ConfigHelpSubcommand.long_help
    • ConfigHelpSubcommand.name
    • ConfigHelpSubcommand.short_help
• pestifer.subcommands.desolvate module
  • Example:
  • DesolvateSubcommand
    • DesolvateSubcommand.add_subparser()
    • DesolvateSubcommand.func()
    • DesolvateSubcommand.func_returns_type
    • DesolvateSubcommand.long_help
    • DesolvateSubcommand.name
    • DesolvateSubcommand.short_help
• pestifer.subcommands.fetch_example module
  • FetchExampleSubcommand
    • FetchExampleSubcommand.add_subparser()
    • FetchExampleSubcommand.func()
    • FetchExampleSubcommand.func_returns_type
    • FetchExampleSubcommand.long_help
    • FetchExampleSubcommand.name
    • FetchExampleSubcommand.short_help
• pestifer.subcommands.follow_namd_log module
  • FollowNAMDLogSubcommand
    • FollowNAMDLogSubcommand.add_subparser()
    • FollowNAMDLogSubcommand.func()
    • FollowNAMDLogSubcommand.long_help
    • FollowNAMDLogSubcommand.name
    • FollowNAMDLogSubcommand.short_help
• pestifer.subcommands.make_ligand_mol2 module
  • MakeLigandMol2Subcommand
    • MakeLigandMol2Subcommand.add_subparser()
    • MakeLigandMol2Subcommand.func()
    • MakeLigandMol2Subcommand.func_returns_type
    • MakeLigandMol2Subcommand.long_help
    • MakeLigandMol2Subcommand.name
    • MakeLigandMol2Subcommand.short_help
• pestifer.subcommands.make_namd_restart module
  • MakeNAMDRestartSubcommand
    • MakeNAMDRestartSubcommand.add_subparser()
    • MakeNAMDRestartSubcommand.func()
    • MakeNAMDRestartSubcommand.long_help
    • MakeNAMDRestartSubcommand.name
    • MakeNAMDRestartSubcommand.short_help
• pestifer.subcommands.make_pdbcollection module
  • MakePDBCollectionSubcommand
    • MakePDBCollectionSubcommand.add_subparser()
    • MakePDBCollectionSubcommand.func()
    • MakePDBCollectionSubcommand.long_help
    • MakePDBCollectionSubcommand.name
    • MakePDBCollectionSubcommand.short_help
• pestifer.subcommands.mdplot module
  • MDPlotSubcommand
    • MDPlotSubcommand.add_subparser()
    • MDPlotSubcommand.func()
    • MDPlotSubcommand.func_returns_type
    • MDPlotSubcommand.log_file
    • MDPlotSubcommand.long_help
    • MDPlotSubcommand.name
    • MDPlotSubcommand.short_help
• pestifer.subcommands.modify_package module
  • ModifyPackageSubcommand
    • ModifyPackageSubcommand.add_subparser()
    • ModifyPackageSubcommand.func()
    • ModifyPackageSubcommand.long_help
    • ModifyPackageSubcommand.name
    • ModifyPackageSubcommand.short_help
• pestifer.subcommands.new_system module
  • NewSystemSubcommand
    • NewSystemSubcommand.add_subparser()
    • NewSystemSubcommand.func()
    • NewSystemSubcommand.long_help
    • NewSystemSubcommand.name
    • NewSystemSubcommand.short_help
• pestifer.subcommands.rebuild_charmmff_cache module
  • RebuildCHARMMFFCache
    • RebuildCHARMMFFCache.add_subparser()
    • RebuildCHARMMFFCache.func()
    • RebuildCHARMMFFCache.long_help
    • RebuildCHARMMFFCache.name
    • RebuildCHARMMFFCache.short_help
• pestifer.subcommands.setup_vmd module
  • SetupVMDSubcommand
    • SetupVMDSubcommand.add_subparser()
    • SetupVMDSubcommand.func()
    • SetupVMDSubcommand.long_help
    • SetupVMDSubcommand.name
    • SetupVMDSubcommand.short_help
• pestifer.subcommands.show_resources module
  • ShowResourcesSubcommand
    • ShowResourcesSubcommand.add_subparser()
    • ShowResourcesSubcommand.func()
    • ShowResourcesSubcommand.long_help
    • ShowResourcesSubcommand.name
    • ShowResourcesSubcommand.short_help
• pestifer.subcommands.wheretcl module
  • WhereTCLSubcommand
    • WhereTCLSubcommand.add_subparser()
    • WhereTCLSubcommand.func()
    • WhereTCLSubcommand.long_help
    • WhereTCLSubcommand.name
    • WhereTCLSubcommand.short_help