`timeseries`¶

The list of energy-like quantities to plot vs timestep. These quantities are extracted from the NAMD log files and plotted against timestep. To combine traces onto a single plot, the list element itself can be a list. The default is to plot density, but you can specify any quantity in an ENERGY: output line or an XST file, including:

density (not included in ENERGY:, but computed)
a_x (cell size along x direction)
b_y (cell size along y direction)
c_z (cell size along z direction)
pressure
temperature

Example:¶

timeseries:
- density
- - a_x
  - b_y
  - c_z
- pressure
- temperature